Posted by raahelb 4 hours ago
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I wish we didn’t need these again, but here is the honest version of Anthropic’s biology announcement (Caveat: I haven’t worked in bioinformatics for many years.) The good: Anthropic ran ~950 Claude agents over a large biological sequence database. Claude searched, wrote code, compared sequences and genomic neighborhoods, and found an interesting pattern that apparently had not been noticed before: a known reverse transcriptase associated with another gene and a repetitive DNA array.
That is cool. Automating this kind of open-ended bioinformatics search at scale is useful, and Claude may have found a lead a human would have missed.
But: Claude did not do a biological experiment. It searched databases and analyzed data.
Humans then took the candidate into the wet lab. And the wet-lab result so far is modest: they showed that the repeat array produces short RNAs.
We still don’t know what the system does. No function, mechanism, phenotype, targeting, defense activity, or programmability has been demonstrated.
This is also where the CRISPR framing gets ahead of the result. Right now, “it has some features reminiscent of known programmable systems” is a hypothesis for what to investigate next, not a discovery that it behaves like CRISPR.
And there is a missing baseline: bioinformatics has had tools for finding unusual gene neighborhoods and candidate systems for years. The interesting comparison is 950 Claude agents vs. an expert using the best existing computational pipelines - not Claude vs. someone manually looking through 200,000 sequences.
So my honest announcement would be:
Claude autonomously found an interesting candidate for a previously uncharacterized biological system. A small human wet-lab experiment confirmed that part of the candidate is expressed. We don’t yet know what it does.
That is a good result.
But in a regular biology lab, this isn’t the finished paper. It is the result you show at lab meeting and say: “This looks interesting. Now we need to figure out what the hell it does.”
Maybe that next step leads to a major discovery. But that discovery hasn’t happened yet.
"But in a regular biology lab, this isn’t the finished paper. It is the result you show at lab meeting and say: “This looks interesting. Now we need to figure out what the hell it does.”"
This is not how people write!
Good hypotheses are a dime a dozen in life sciences. Biology is very unforgiving and most hypotheses lead to nothing when thoroughly tested. This is true for something as "simple" as enzymes as in this case, but even more true for curing diseases. Otherwise, there would not be any failures of phase III clinical trials, after billions USD spent on preclinical research and prior clinical trials.
When overinterpreting these (interesting) results, you are entering Andy Grove Fallacy [0] territory very fast.
[0] https://www.science.org/content/blog-post/andy-grove-rich-fa...
> The sad thing is that Dario knows better.
He was a PhD student. He knows the significance level of this result. He knows that if he had walked into Bill’s office (his advisor) with “we found an interesting system, but we still don’t know what it does” and said he was ready to graduate, Bill would have kicked him out of the room.
But somehow, when the IPO is around the corner, this becomes “AI is starting to drive biological discovery.”
There are so many people involved on this yet we still say things like "Claude did", we need to start waking up and being more real about how we are still in "AI + Human" land.
What's wrong with saying "A team of researchers backed by Anthropic using Claude discovers a novel enzyme system with CRISPR-like repeats" or, ffs, mention the lead researcher in the headline?
BTW the first author of the paper worked in the Doudna lab studying the origins of crispr (and after their PhD, joined Anthropic). All of the authors either have, or are going to have, excellent careers. I dont' think they are worried about attribution.
It's totally legitimate research worthy of publication, but Anthropic chose a hot technology in the popular imagination for a reason. Now I'm going to have to see "Claude invented a new CRISPR in 24 hours!" everywhere and trying to correct it will just turn into repetitive arguments about goalposts moving....
At Google/OpenAI/Anthropic level you have clusters of LLM agents working with clusters of ML agents doing all kinds of tasks. A lot of this falls into proto-RSI where the LLM can improve the ML agents output based on analysis of said ML.
This isn't much different from how people work, you can't dump even part of DNA context in a human mind and get anything useful out. We has humans have to use and build tools to find answers because of scaling efficiencies of different computation types.
This A.I. hype makes the Internet Bubble look like a walk in the park.
no mention of opus/mythos/fable or anything..
> After reviewing the pre-print, Feng Zhang, one of the pioneers of CRISPR genome editing and a professor at MIT and the Broad Institute said:
> This is an exciting example of how AI agents can contribute to biological discovery. The identification of RNA-repeat arrays associated with reverse transcriptases is genuinely intriguing and merits further investigation. I hope this work encourages more scientists to explore how AI can support their research.
Not saying that they were right or wrong, but that single moment sullied all AI-driven breakthroughs that came after it, and I don't think it was ever particularly relevant, at least not nearly to the degree that it was presented in the media. But I guess it ended up being a convenient outlet for AI anxiety in the end.
The LLMs that make this stuff possible weren't created by the AI labs from whole cloth. They crept up and jumped onto the shoulders of giants, basically the collected (non-consensually, of course, but jingles keys look at this pelican riding a bicycle!) works of humanity. Every discovery LLMs enumerate in this fashion rightfully needs to have a billboard-sized asterisk regarding the provenance of the discovery. "Claude" didn't discover this, everyone who worked to produce the internet that Anthropic siphoned into their dataset belongs on the credits.
It's great that it happened, and I wish them the best of luck in using our work to make the world a better place. Just don't forget who the rightful owners are.
The people that say "It's just a next word predictor" might as well be saying "Well, it's just a long rage nuclear missile".
Generally speaking, hiring an army of influencers to shill for you results in bad PR, and comments like this one.
It's not novel, and they don't know if it means anything. They published it here for PR purposes.
Is there an equivalent headline for Anthropic of this?: https://www.businessinsider.com/inside-open-ai-influencer-ma...
https://www.businessinsider.com/emma-orhun-canceled-claude-p...
> Anthropic’s head of influencer, Lexie Barnhorn, has described creators as essential to building trust in complicated technical products. Its strategy is partly consumer-to-business: People who adopt Claude personally may later introduce it in their workplaces.
> Anthropic’s best-known creator events have been smaller dinners and pop-ups in which Claude remained the ostensible subject.
Let me know when OpenAI starts actively trying to cure diseases.